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Europium in PDB 1wc4: Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium

Enzymatic activity of Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium

All present enzymatic activity of Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium:
4.6.1.1;

Protein crystallography data

The structure of Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium, PDB code: 1wc4 was solved by C.Steegborn, T.N.Litvin, L.R.Levin, J.Buck, H.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.91 / 3.0
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.601, 70.202, 99.654, 90.00, 90.00, 90.00
R / Rfree (%) 27.4 / 31.5

Europium Binding Sites:

The binding sites of Europium atom in the Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium (pdb code 1wc4). This binding sites where shown within 5.0 Angstroms radius around Europium atom.
In total 2 binding sites of Europium where determined in the Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium, PDB code: 1wc4:
Jump to Europium binding site number: 1; 2;

Europium binding site 1 out of 2 in 1wc4

Go back to Europium Binding Sites List in 1wc4
Europium binding site 1 out of 2 in the Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium


Mono view


Stereo pair view

A full contact list of Europium with other atoms in the Eu binding site number 1 of Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Eu2100

b:10.9
occ:1.00
OD1 A:ASP1061 2.3 10.9 1.0
O1B A:APC1500 2.4 10.9 1.0
OD1 A:ASP1017 2.5 10.9 1.0
O A:ILE1018 2.8 10.9 1.0
OD2 A:ASP1061 2.8 10.9 1.0
O1A A:APC1500 2.9 10.9 1.0
CG A:ASP1061 2.9 10.9 1.0
OD2 A:ASP1017 3.0 10.9 1.0
CG A:ASP1017 3.1 10.9 1.0
PB A:APC1500 3.4 10.9 1.0
C3A A:APC1500 3.7 10.9 1.0
O3G A:APC1500 3.7 10.9 1.0
PA A:APC1500 3.9 10.9 1.0
O3B A:APC1500 3.9 10.9 1.0
C A:ILE1018 4.0 10.9 1.0
N A:ILE1018 4.4 10.9 1.0
CB A:ASP1061 4.4 10.9 1.0
PG A:APC1500 4.4 10.9 1.0
O A:HOH2001 4.5 10.9 1.0
CB A:ASP1017 4.5 10.9 1.0
O2A A:APC1500 4.6 10.9 1.0
O2B A:APC1500 4.8 10.9 1.0
CA A:ILE1018 4.8 10.9 1.0
CG2 A:VAL1019 4.9 10.9 1.0
N A:VAL1019 5.0 10.9 1.0

Europium binding site 2 out of 2 in 1wc4

Go back to Europium Binding Sites List in 1wc4
Europium binding site 2 out of 2 in the Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium


Mono view


Stereo pair view

A full contact list of Europium with other atoms in the Eu binding site number 2 of Soluble Adenylyl Cyclase Cyac From S. Platensis in Complex with Alpha,Beta-Methylene-Atp and Europium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Eu2100

b:10.9
occ:1.00
OD1 B:ASP1017 2.0 10.9 1.0
O1B B:APC1500 2.1 10.9 1.0
OD1 B:ASP1061 2.3 10.9 1.0
O B:ILE1018 2.6 10.9 1.0
O3G B:APC1500 2.6 10.9 1.0
OD2 B:ASP1061 2.7 10.9 1.0
CG B:ASP1017 2.8 10.9 1.0
CG B:ASP1061 2.9 10.9 1.0
OD2 B:ASP1017 2.9 10.9 1.0
PB B:APC1500 3.2 10.9 1.0
O1A B:APC1500 3.3 10.9 1.0
C3A B:APC1500 3.4 10.9 1.0
C B:ILE1018 3.8 10.9 1.0
PG B:APC1500 3.8 10.9 1.0
O3B B:APC1500 3.8 10.9 1.0
PA B:APC1500 4.0 10.9 1.0
N B:ILE1018 4.1 10.9 1.0
O B:HOH2001 4.2 10.9 1.0
CB B:ASP1017 4.3 10.9 1.0
CB B:ASP1061 4.4 10.9 1.0
O2B B:APC1500 4.5 10.9 1.0
CA B:ILE1018 4.5 10.9 1.0
O1G B:APC1500 4.6 10.9 1.0
N B:VAL1019 4.8 10.9 1.0
CG1 B:ILE1018 4.9 10.9 1.0
C B:ASP1017 4.9 10.9 1.0
O2A B:APC1500 4.9 10.9 1.0
O2G B:APC1500 5.0 10.9 1.0

Reference:

C.Steegborn, T.N.Litvin, L.R.Levin, J.Buck, H.Wu. Bicarbonate Activation of Adenylyl Cyclase Via Promotion of Catalytic Active Site Closure and Metal Recruitment Nat.Struct.Mol.Biol. V. 12 32 2005.
ISSN: ISSN 1545-9993
PubMed: 15619637
DOI: 10.1038/NSMB880
Page generated: Sun Dec 13 11:27:45 2020

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