Atomistry » Europium » PDB 1bub-9c8z » 2fby
Atomistry »
  Europium »
    PDB 1bub-9c8z »
      2fby »

Europium in PDB 2fby: Wrn Exonuclease, Eu Complex

Protein crystallography data

The structure of Wrn Exonuclease, Eu Complex, PDB code: 2fby was solved by J.J.Perry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.80 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 80.089, 80.089, 92.970, 90.00, 90.00, 120.00
R / Rfree (%) 22.1 / 24.5

Europium Binding Sites:

The binding sites of Europium atom in the Wrn Exonuclease, Eu Complex (pdb code 2fby). This binding sites where shown within 5.0 Angstroms radius around Europium atom.
In total 2 binding sites of Europium where determined in the Wrn Exonuclease, Eu Complex, PDB code: 2fby:
Jump to Europium binding site number: 1; 2;

Europium binding site 1 out of 2 in 2fby

Go back to Europium Binding Sites List in 2fby
Europium binding site 1 out of 2 in the Wrn Exonuclease, Eu Complex


Mono view


Stereo pair view

A full contact list of Europium with other atoms in the Eu binding site number 1 of Wrn Exonuclease, Eu Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Eu237

b:58.1
occ:0.70
OE2 A:GLU84 2.6 43.2 1.0
OD2 A:ASP216 2.7 40.9 1.0
O A:HOH346 2.7 35.7 1.0
OD1 A:ASP82 2.7 46.5 1.0
O A:HOH327 3.1 60.0 1.0
OE1 A:GLU84 3.1 41.6 1.0
CD A:GLU84 3.2 40.4 1.0
O A:HOH335 3.4 54.6 1.0
EU A:EU3238 3.4 54.3 0.5
CG A:ASP82 3.5 40.8 1.0
CG A:ASP216 3.7 39.4 1.0
OD2 A:ASP82 3.8 40.7 1.0
NH2 A:ARG196 4.0 53.7 1.0
CB A:ASP216 4.0 37.2 1.0
O A:MET83 4.3 35.9 1.0
NE2 A:GLN101 4.7 35.5 1.0
CG A:GLU84 4.7 37.3 1.0
OD1 A:ASP216 4.8 40.6 1.0
CB A:ASP82 4.8 37.5 1.0

Europium binding site 2 out of 2 in 2fby

Go back to Europium Binding Sites List in 2fby
Europium binding site 2 out of 2 in the Wrn Exonuclease, Eu Complex


Mono view


Stereo pair view

A full contact list of Europium with other atoms in the Eu binding site number 2 of Wrn Exonuclease, Eu Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Eu238

b:54.3
occ:0.50
O A:HOH346 2.5 35.7 1.0
OD2 A:ASP82 2.6 40.7 1.0
O A:HOH349 2.8 63.2 1.0
O A:HOH327 3.1 60.0 1.0
OD1 A:ASP82 3.3 46.5 1.0
CG A:ASP82 3.3 40.8 1.0
EU A:EU3237 3.4 58.1 0.7
O A:MET83 4.3 35.9 1.0
O A:HOH264 4.6 44.4 1.0
CB A:ASP82 4.8 37.5 1.0
O A:HOH360 5.0 52.0 1.0
OD1 A:ASP143 5.0 40.0 1.0

Reference:

J.J.Perry, S.M.Yannone, L.G.Holden, C.Hitomi, A.Asaithamby, S.Han, P.K.Cooper, D.J.Chen, J.A.Tainer. Wrn Exonuclease Structure and Molecular Mechanism Imply An Editing Role in Dna End Processing. Nat.Struct.Mol.Biol. V. 13 414 2006.
ISSN: ISSN 1545-9993
PubMed: 16622405
DOI: 10.1038/NSMB1088
Page generated: Wed Jul 31 10:40:14 2024

Last articles

Ca in 3L4P
Ca in 3L4O
Ca in 3L3T
Ca in 3L33
Ca in 3L4M
Ca in 3L30
Ca in 3L2N
Ca in 3L2M
Ca in 3L2L
Ca in 3KO0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy