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Europium in PDB 2pe7: Thaumatin From Thaumatococcus Danielli in Complex with Tris- Dipicolinate Europium

Protein crystallography data

The structure of Thaumatin From Thaumatococcus Danielli in Complex with Tris- Dipicolinate Europium, PDB code: 2pe7 was solved by G.Pompidor, J.Vicat, R.Kahn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.68 / 1.46
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.550, 57.550, 149.400, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.6

Europium Binding Sites:

The binding sites of Europium atom in the Thaumatin From Thaumatococcus Danielli in Complex with Tris- Dipicolinate Europium (pdb code 2pe7). This binding sites where shown within 5.0 Angstroms radius around Europium atom.
In total only one binding site of Europium was determined in the Thaumatin From Thaumatococcus Danielli in Complex with Tris- Dipicolinate Europium, PDB code: 2pe7:

Europium binding site 1 out of 1 in 2pe7

Go back to Europium Binding Sites List in 2pe7
Europium binding site 1 out of 1 in the Thaumatin From Thaumatococcus Danielli in Complex with Tris- Dipicolinate Europium


Mono view


Stereo pair view

A full contact list of Europium with other atoms in the Eu binding site number 1 of Thaumatin From Thaumatococcus Danielli in Complex with Tris- Dipicolinate Europium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Eu601

b:11.5
occ:0.26
O1 A:PDC604 2.4 9.4 0.3
O4 A:PDC602 2.5 15.9 0.3
O1 A:PDC602 2.5 15.8 0.3
O1 A:PDC603 2.5 14.7 0.3
N1 A:PDC604 2.5 11.4 0.3
N1 A:PDC602 2.5 16.3 0.3
N1 A:PDC603 2.5 16.6 0.3
O4 A:PDC603 2.6 17.2 0.3
O4 A:PDC604 2.6 11.5 0.3
C7 A:PDC604 3.3 10.8 0.3
C8 A:PDC602 3.3 16.2 0.3
C7 A:PDC602 3.3 16.1 0.3
C2 A:PDC604 3.4 10.4 0.3
C6 A:PDC602 3.4 16.1 0.3
C7 A:PDC603 3.4 16.1 0.3
C2 A:PDC602 3.4 16.1 0.3
C6 A:PDC604 3.4 11.1 0.3
C6 A:PDC603 3.4 16.5 0.3
C2 A:PDC603 3.4 15.9 0.3
C8 A:PDC603 3.4 16.7 0.3
C8 A:PDC604 3.4 11.4 0.3
O2 A:PDC604 4.5 10.0 0.3
O A:HOH883 4.5 32.5 1.0
O3 A:PDC602 4.5 15.9 0.3
O2 A:PDC602 4.5 16.3 0.3
O2 A:PDC603 4.6 15.3 0.3
NE A:ARG82 4.6 7.1 0.5
O3 A:PDC603 4.6 18.2 0.3
O3 A:PDC604 4.7 13.2 0.3
C3 A:PDC604 4.7 11.0 0.3
C5 A:PDC602 4.7 16.6 0.3
C3 A:PDC602 4.7 16.6 0.3
C5 A:PDC604 4.7 11.3 0.3
C5 A:PDC603 4.7 16.6 0.3
C3 A:PDC603 4.7 16.4 0.3
NH1 A:ARG82 4.9 7.7 0.5

Reference:

G.Pompidor, O.Maury, J.Vicat, R.Kahn. A Dipicolinate Lanthanide Complex For Solving Protein Structures Using Anomalous Diffraction. Acta Crystallogr.,Sect.D V. 66 762 2010.
ISSN: ISSN 0907-4449
PubMed: 20606256
DOI: 10.1107/S0907444910010954
Page generated: Sun Dec 13 11:27:47 2020

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