Atomistry » Europium » PDB 1bub-6fkw » 3ojo
Atomistry »
  Europium »
    PDB 1bub-6fkw »
      3ojo »

Europium in PDB 3ojo: Derivative Structure of the Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O From S. Aureus

Protein crystallography data

The structure of Derivative Structure of the Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O From S. Aureus, PDB code: 3ojo was solved by S.Nessler, J.Gruszczyk, V.Olivares-Illana, P.Meyer, S.Morera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.63 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.220, 131.497, 158.820, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 24.6

Europium Binding Sites:

The binding sites of Europium atom in the Derivative Structure of the Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O From S. Aureus (pdb code 3ojo). This binding sites where shown within 5.0 Angstroms radius around Europium atom.
In total 2 binding sites of Europium where determined in the Derivative Structure of the Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O From S. Aureus, PDB code: 3ojo:
Jump to Europium binding site number: 1; 2;

Europium binding site 1 out of 2 in 3ojo

Go back to Europium Binding Sites List in 3ojo
Europium binding site 1 out of 2 in the Derivative Structure of the Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O From S. Aureus


Mono view


Stereo pair view

A full contact list of Europium with other atoms in the Eu binding site number 1 of Derivative Structure of the Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O From S. Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Eu501

b:33.2
occ:0.53
O2 B:PDC504 1.5 79.1 1.0
O1 B:PDC502 1.7 46.0 1.0
N1 B:PDC504 2.0 75.6 1.0
N1 B:PDC502 2.3 47.0 0.8
O2 B:PDC503 2.3 54.7 1.0
C7 B:PDC504 2.3 75.5 1.0
O4 B:PDC503 2.5 51.2 1.0
C2 B:PDC504 2.5 74.5 1.0
C7 B:PDC502 2.6 46.5 0.9
C2 B:PDC502 2.9 45.8 0.7
N1 B:PDC503 2.9 51.4 1.0
C6 B:PDC504 3.1 75.8 1.0
O4 B:PDC502 3.3 49.4 1.0
C7 B:PDC503 3.4 51.2 1.0
C6 B:PDC502 3.4 47.4 1.0
O4 B:PDC504 3.4 76.5 1.0
C8 B:PDC503 3.5 52.4 1.0
O1 B:PDC504 3.5 75.4 1.0
C2 B:PDC503 3.6 50.2 1.0
C6 B:PDC503 3.7 51.5 1.0
C8 B:PDC504 3.7 76.7 1.0
C8 B:PDC502 3.8 48.9 0.4
C3 B:PDC504 3.9 72.5 1.0
O2 B:PDC502 4.0 50.1 1.0
C3 B:PDC502 4.3 43.8 1.0
C5 B:PDC504 4.3 73.5 1.0
O1 B:PDC503 4.5 50.9 1.0
O3 B:PDC503 4.6 54.9 1.0
C4 B:PDC504 4.6 72.6 1.0
C5 B:PDC502 4.7 45.0 0.9
CE1 A:HIS242 4.7 42.1 1.0
NH2 A:ARG244 4.7 67.3 1.0
O3 B:PDC504 4.9 78.8 1.0
C3 B:PDC503 5.0 48.2 1.0

Europium binding site 2 out of 2 in 3ojo

Go back to Europium Binding Sites List in 3ojo
Europium binding site 2 out of 2 in the Derivative Structure of the Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O From S. Aureus


Mono view


Stereo pair view

A full contact list of Europium with other atoms in the Eu binding site number 2 of Derivative Structure of the Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O From S. Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Eu501

b:22.0
occ:0.44
O1 A:PDC503 1.4 38.7 0.8
O4 A:PDC502 1.8 52.3 1.0
O4 A:PDC504 2.0 39.1 1.0
N1 A:PDC503 2.3 39.5 0.6
N1 A:PDC502 2.4 51.7 0.8
C7 A:PDC503 2.4 39.1 1.0
C2 A:PDC503 2.7 38.4 1.0
N1 A:PDC504 2.8 39.4 0.9
C8 A:PDC502 2.9 52.3 1.0
O1 A:PDC502 2.9 52.2 1.0
C6 A:PDC502 3.1 51.8 1.0
O1 A:PDC504 3.1 39.5 1.0
C8 A:PDC504 3.1 40.0 0.8
C2 A:PDC502 3.4 50.6 1.0
C6 A:PDC504 3.5 39.5 1.0
C6 A:PDC503 3.5 39.7 1.0
O4 A:PDC503 3.6 42.2 1.0
C7 A:PDC502 3.6 52.1 1.0
O2 A:PDC503 3.7 42.7 0.8
C2 A:PDC504 3.8 38.3 1.0
C7 A:PDC504 3.9 39.5 1.0
O3 A:PDC502 4.1 53.5 1.0
C8 A:PDC503 4.1 40.7 1.0
C3 A:PDC503 4.2 36.4 0.8
O3 A:PDC504 4.2 41.7 0.9
C5 A:PDC502 4.5 49.6 0.6
O A:HOH427 4.5 37.5 1.0
NH1 B:ARG244 4.5 70.9 1.0
C3 A:PDC502 4.7 48.6 0.9
C5 A:PDC503 4.7 37.4 1.0
CE1 B:HIS242 4.8 39.5 1.0
C5 A:PDC504 4.9 37.2 0.4
O2 A:PDC502 4.9 55.7 1.0
NH2 A:ARG211 5.0 61.3 1.0
C4 A:PDC503 5.0 36.4 0.9

Reference:

J.Gruszczyk, A.Fleurie, V.Olivares-Illana, E.Bechet, I.Zanella-Cleon, S.Morera, P.Meyer, G.Pompidor, R.Kahn, C.Grangeasse, S.Nessler. Structure Analysis of the Staphylococcus Aureus Udp-N-Acetyl-Mannosamine Dehydrogenase CAP5O Involved in Capsular Polysaccharide Biosynthesis. J.Biol.Chem. V. 286 17112 2011.
ISSN: ISSN 0021-9258
PubMed: 21454499
DOI: 10.1074/JBC.M110.216002
Page generated: Sun Dec 13 11:27:48 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy